PhytophthoraV1, Main, Exploration, bibRecord, 001553

Dissection of two soybean QTL conferring partial resistance to Phytophthora sojae through sequence and gene expression analysis.

Identifieur interne : 001553 ( Main/Exploration ); précédent : 001552; suivant : 001554

Dissection of two soybean QTL conferring partial resistance to Phytophthora sojae through sequence and gene expression analysis.

Auteurs : Hehe Wang [États-Unis] ; Asela Wijeratne ; Saranga Wijeratne ; Sungwoo Lee ; Christopher G. Taylor ; Steven K. St Martin ; Leah Mchale ; Anne E. Dorrance

Source :

BMC genomics [ 1471-2164 ] ; 2012.

RBID : pubmed:22925529

Descripteurs français

KwdFr :
- Analyse de séquence d'ADN (MeSH), Chromosomes de plante (MeSH), Facteurs de transcription (génétique), Facteurs de transcription (métabolisme), Haplotypes (MeSH), Interactions hôte-parasite (MeSH), Locus de caractère quantitatif (MeSH), Phytophthora (pathogénicité), Polymorphisme de nucléotide simple (MeSH), Racines de plante (génétique), Racines de plante (parasitologie), Régulation de l'expression des gènes végétaux (MeSH), Soja (génétique), Ubiquitination (MeSH), Végétaux génétiquement modifiés (génétique).
MESH :
- génétique : Facteurs de transcription, Racines de plante, Soja, Végétaux génétiquement modifiés.
- métabolisme : Facteurs de transcription.
- parasitologie : Racines de plante.
- pathogénicité : Phytophthora.
- Analyse de séquence d'ADN, Chromosomes de plante, Haplotypes, Interactions hôte-parasite, Locus de caractère quantitatif, Polymorphisme de nucléotide simple, Régulation de l'expression des gènes végétaux, Ubiquitination.

English descriptors

KwdEn :
- Chromosomes, Plant (MeSH), Gene Expression Regulation, Plant (MeSH), Haplotypes (MeSH), Host-Parasite Interactions (MeSH), Phytophthora (pathogenicity), Plant Roots (genetics), Plant Roots (parasitology), Plants, Genetically Modified (genetics), Polymorphism, Single Nucleotide (MeSH), Quantitative Trait Loci (MeSH), Sequence Analysis, DNA (MeSH), Soybeans (genetics), Transcription Factors (genetics), Transcription Factors (metabolism), Ubiquitination (MeSH).
MESH :
- chemical , genetics : Transcription Factors.
- genetics : Plant Roots, Plants, Genetically Modified, Soybeans.
- chemical , metabolism : Transcription Factors.
- parasitology : Plant Roots.
- pathogenicity : Phytophthora.
- Chromosomes, Plant, Gene Expression Regulation, Plant, Haplotypes, Host-Parasite Interactions, Polymorphism, Single Nucleotide, Quantitative Trait Loci, Sequence Analysis, DNA, Ubiquitination.

Abstract

BACKGROUND

Phytophthora sojae is the primary pathogen of soybeans that are grown on poorly drained soils. Race-specific resistance to P. sojae in soybean is gene-for-gene, although in many areas of the US and worldwide there are populations that have adapted to the most commonly deployed resistance to P. sojae ( Rps) genes. Hence, this system has received increased attention towards identifying mechanisms and molecular markers associated with partial resistance to this pathogen. Several quantitative trait loci (QTL) have been identified in the soybean cultivar 'Conrad' that contributes to the expression of partial resistance to multiple P. sojae isolates.

RESULTS

In this study, two of the Conrad QTL on chromosome 19 were dissected through sequence and expression analysis of genes in both resistant (Conrad) and susceptible ('Sloan') genotypes. There were 1025 single nucleotide polymorphisms (SNPs) in 87 of 153 genes sequenced from Conrad and Sloan. There were 304 SNPs in 54 genes sequenced from Conrad compared to those from both Sloan and Williams 82, of which 11 genes had SNPs unique to Conrad. Eleven of 19 genes in these regions analyzed with qRT-PCR had significant differences in fold change of transcript abundance in response to infection with P. sojae in lines with QTL haplotype from the resistant parent compared to those with the susceptible parent haplotype. From these, 8 of the 11 genes had SNPs in the upstream, untranslated region, exon, intron, and/or downstream region. These 11 candidate genes encode proteins potentially involved in signal transduction, hormone-mediated pathways, plant cell structural modification, ubiquitination, and basal resistance.

CONCLUSIONS

These findings may indicate a complex defense network with multiple mechanisms underlying these two soybean QTL conferring resistance to P. sojae. SNP markers derived from these candidate genes can contribute to fine mapping of QTL and marker assisted breeding for resistance to P. sojae.

DOI: 10.1186/1471-2164-13-428
PubMed: 22925529
PubMed Central: PMC3443417

Affiliations:

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Le document en format XML

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<term>Phytophthora (pathogenicity)</term>
<term>Plant Roots (genetics)</term>
<term>Plant Roots (parasitology)</term>
<term>Plants, Genetically Modified (genetics)</term>
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<term>Facteurs de transcription (métabolisme)</term>
<term>Haplotypes (MeSH)</term>
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<term>Polymorphisme de nucléotide simple (MeSH)</term>
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<term>Racines de plante (parasitologie)</term>
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<term>Végétaux génétiquement modifiés (génétique)</term>
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<term>Haplotypes</term>
<term>Host-Parasite Interactions</term>
<term>Polymorphism, Single Nucleotide</term>
<term>Quantitative Trait Loci</term>
<term>Sequence Analysis, DNA</term>
<term>Ubiquitination</term>
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<term>Interactions hôte-parasite</term>
<term>Locus de caractère quantitatif</term>
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<front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b>
</p>
<p>Phytophthora sojae is the primary pathogen of soybeans that are grown on poorly drained soils. Race-specific resistance to P. sojae in soybean is gene-for-gene, although in many areas of the US and worldwide there are populations that have adapted to the most commonly deployed resistance to P. sojae ( Rps) genes. Hence, this system has received increased attention towards identifying mechanisms and molecular markers associated with partial resistance to this pathogen. Several quantitative trait loci (QTL) have been identified in the soybean cultivar 'Conrad' that contributes to the expression of partial resistance to multiple P. sojae isolates.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>RESULTS</b>
</p>
<p>In this study, two of the Conrad QTL on chromosome 19 were dissected through sequence and expression analysis of genes in both resistant (Conrad) and susceptible ('Sloan') genotypes. There were 1025 single nucleotide polymorphisms (SNPs) in 87 of 153 genes sequenced from Conrad and Sloan. There were 304 SNPs in 54 genes sequenced from Conrad compared to those from both Sloan and Williams 82, of which 11 genes had SNPs unique to Conrad. Eleven of 19 genes in these regions analyzed with qRT-PCR had significant differences in fold change of transcript abundance in response to infection with P. sojae in lines with QTL haplotype from the resistant parent compared to those with the susceptible parent haplotype. From these, 8 of the 11 genes had SNPs in the upstream, untranslated region, exon, intron, and/or downstream region. These 11 candidate genes encode proteins potentially involved in signal transduction, hormone-mediated pathways, plant cell structural modification, ubiquitination, and basal resistance.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b>
</p>
<p>These findings may indicate a complex defense network with multiple mechanisms underlying these two soybean QTL conferring resistance to P. sojae. SNP markers derived from these candidate genes can contribute to fine mapping of QTL and marker assisted breeding for resistance to P. sojae.</p>
</div>
</front>
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<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Phytophthora sojae is the primary pathogen of soybeans that are grown on poorly drained soils. Race-specific resistance to P. sojae in soybean is gene-for-gene, although in many areas of the US and worldwide there are populations that have adapted to the most commonly deployed resistance to P. sojae ( Rps) genes. Hence, this system has received increased attention towards identifying mechanisms and molecular markers associated with partial resistance to this pathogen. Several quantitative trait loci (QTL) have been identified in the soybean cultivar 'Conrad' that contributes to the expression of partial resistance to multiple P. sojae isolates.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">In this study, two of the Conrad QTL on chromosome 19 were dissected through sequence and expression analysis of genes in both resistant (Conrad) and susceptible ('Sloan') genotypes. There were 1025 single nucleotide polymorphisms (SNPs) in 87 of 153 genes sequenced from Conrad and Sloan. There were 304 SNPs in 54 genes sequenced from Conrad compared to those from both Sloan and Williams 82, of which 11 genes had SNPs unique to Conrad. Eleven of 19 genes in these regions analyzed with qRT-PCR had significant differences in fold change of transcript abundance in response to infection with P. sojae in lines with QTL haplotype from the resistant parent compared to those with the susceptible parent haplotype. From these, 8 of the 11 genes had SNPs in the upstream, untranslated region, exon, intron, and/or downstream region. These 11 candidate genes encode proteins potentially involved in signal transduction, hormone-mediated pathways, plant cell structural modification, ubiquitination, and basal resistance.</AbstractText>
<AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">These findings may indicate a complex defense network with multiple mechanisms underlying these two soybean QTL conferring resistance to P. sojae. SNP markers derived from these candidate genes can contribute to fine mapping of QTL and marker assisted breeding for resistance to P. sojae.</AbstractText>
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<ForeName>Hehe</ForeName>
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Dissection of two soybean QTL conferring partial resistance to Phytophthora sojae through sequence and gene expression analysis.

Dissection of two soybean QTL conferring partial resistance to Phytophthora sojae through sequence and gene expression analysis.

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